Infectious Diseases and Clinical Microbiology

Infectious Diseases: Diagnosis, Treatment & Travel Medicine

Infectious diseases specialists diagnose and treat infections from bacteria, viruses, fungi, and parasites, focusing on fevers, antibiotics, and vaccines.

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The Immunological Screening Paradigm

The Immunological Screening Paradigm

The diagnostic evaluation of tuberculosis is a multi-tiered process designed to distinguish between latent infection and active disease, two states that require vastly different clinical management. The first tier involves screening for immunological sensitization to Mycobacterium tuberculosis antigens. This determines if the patient’s immune system has encountered the bacterium, regardless of whether the bacteria are currently dormant or replicating. Two primary methods facilitate this: the Tuberculin Skin Test (TST) and Interferon-Gamma Release Assays (IGRAs).

The Tuberculin Skin Test (Mantoux test) involves the intradermal injection of purified protein derivative (PPD) into the forearm. If the patient has been infected, sensitized T-cells will migrate to the injection site, causing a localized delayed-type hypersensitivity reaction. This manifests as an induration (a palpable hard swelling) measured 48 to 72 hours later. While widely used, the TST has limitations, including false positives in individuals vaccinated with BCG (Bacille Calmette-Guérin) and false negatives in those with compromised immune systems.

Interferon-Gamma Release Assays (IGRAs) are modern blood tests that measure the cell-mediated immune response. Blood samples are mixed with specific TB antigens. If the patient’s T cells recognize these antigens, they release interferon gamma, which is quantified. IGRAs offer significant advantages: they require only a single patient visit, are not affected by prior BCG vaccination (eliminating false positives from the vaccine), and are generally more specific. However, neither TST nor IGRA can distinguish between latent infection and active disease; they only indicate that infection has occurred at some point.

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Microbiological Confirmation: The Gold Standard

Microbiological Confirmation: The Gold Standard

For the definitive diagnosis of active tuberculosis, microbiological evidence is required. This involves identifying the organism in clinical specimens, most commonly sputum. The evaluation begins with sputum smear microscopy. The sample is stained (typically with Ziehl-Neelsen stain) and examined under a microscope for acid-fast bacilli (AFB). The bacteria’s unique lipid-rich cell wall retains the dye even after acid washing, appearing as bright red rods against a blue background. While rapid and inexpensive, smear microscopy has relatively low sensitivity; a significant bacterial load must be present to be detected.

The gold standard for diagnosis remains the mycobacterial culture. Sputum (or other bodily fluids) is inoculated onto solid or liquid media to grow the bacteria. This process is slow, taking anywhere from two to eight weeks, due to the slow replication rate of M. tuberculosis. However, culture is essential because it enables definitive species identification and, crucially, Drug Susceptibility Testing (DST). Phenotypic DST exposes the cultured bacteria to various antibiotics to determine which drugs effectively kill the strain, guiding the treatment regimen.

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Molecular Diagnostics: The Revolution of Rapid Testing

Molecular Diagnostics: The Revolution of Rapid Testing

In recent years, molecular diagnostics have revolutionized the evaluation of TB. Nucleic Acid Amplification Tests (NAATs), such as the Xpert MTB/RIF assay, detect M. tuberculosis DNA directly from sputum samples. This automated, cartridge-based system provides results in less than two hours.

The Xpert MTB/RIF assay not only confirms the presence of TB DNA with high sensitivity (detecting much lower bacterial loads than smear microscopy) but also simultaneously detects mutations associated with rifampicin resistance, a critical first-line antibiotic. This rapid detection of drug resistance allows clinicians to immediately place patients on appropriate multidrug-resistant (MDR) protocols, significantly improving outcomes and reducing community transmission of resistant strains. These molecular tools are now the WHO-recommended initial diagnostic test for all persons with signs and symptoms of TB.

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Radiological Assessment

Radiological Assessment​

Radiological imaging plays a central role in the evaluation of pulmonary TB. A Chest X-ray (CXR) is often the first investigation performed in symptomatic patients. Classic findings in reactivation TB include infiltrates (shadows) in the upper lobes of the lungs, often with cavitation (holes). Primary TB may present with hilar lymphadenopathy (swollen lymph nodes near the lung root) or pleural effusions. However, radiological findings can be atypical, particularly in immunocompromised patients, making CXR sensitive but not specific.

Computed Tomography (CT) scans provide much higher resolution and are utilized when the CXR is equivocal or to assess the extent of the disease. CT can reveal subtle cavities, tree-in-bud opacities (indicating spread through the airways), and small miliary nodules that might be missed on standard X-rays. Imaging is also critical for evaluating extrapulmonary TB, such as MRI for spinal or brain involvement and ultrasound for renal or abdominal disease.

Evaluation of Extrapulmonary Disease

Diagnosing extrapulmonary TB requires obtaining tissue or fluid from the affected site, which often necessitates invasive procedures.

  • Biopsy: For lymph node or pleural TB, a needle biopsy is performed to obtain tissue for histologic and culture analysis. Pathologists look for granulomas with caseous necrosis, the histological hallmark of the disease.

Fluid Analysis: Pleural fluid, cerebrospinal fluid (CSF), or ascetic fluid is analyzed. In TB meningitis, CSF analysis typically shows elevated protein, low glucose, and a predominance of lymphocytes. Adenosine Deaminase (ADA) levels in these fluids can be a useful adjunctive biomarker, as high levels suggest a TB etiology.

Evaluation of Extrapulmonary Disease

Assessing Physiological Baseline and Co-morbidities

A comprehensive evaluation extends beyond diagnosing the infection to assessing the patient’s overall physiological state.

  • HIV Testing: Universal HIV testing is mandatory for all TB patients, as HIV coinfection fundamentally alters the clinical course and treatment strategy.
  • Liver and Kidney Function: Baseline liver function tests (enzymes, bilirubin) and kidney function tests (creatinine) are essential because first-line TB medications can be hepatotoxic (damaging to the liver) or require dose adjustments in renal failure.
  • Vision and Color Discrimination: Before starting ethambutol, a first-line drug, visual acuity and color vision testing are performed to establish a baseline, as the drug can cause optic neuritis.
  • Diabetes Screening: Given that diabetes can impair the immune response and complicate treatment, screening for glycemic control is part of the standard workup.

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FREQUENTLY ASKED QUESTIONS

Why does the TB skin test require two visits?

The Tuberculin Skin Test requires two visits because the reaction is a delayed-type hypersensitivity response. During the first visit, the fluid is injected. It takes 48 to 72 hours for the immune system to react and create the firm swelling (induration) that indicates infection. The second visit is necessary for a healthcare professional to accurately measure this reaction.

No, a chest X-ray cannot definitively confirm TB. While it can show patterns highly suggestive of the disease, such as cavities or infiltrates, other lung conditions, such as pneumonia, cancer, or fungal infections, can also appear similar. A definitive diagnosis requires identifying the bacteria through sputum analysis or molecular testing.

The IGRA blood test is more specific than the skin test. It is not affected by the BCG vaccine, so it does not give false-positive results in people who were vaccinated as children. It also requires only one visit for the blood draw, eliminating the need to return for reading, which improves convenience and compliance.

Yes, advanced molecular tests like the Xpert MTB/RIF can detect genetic mutations in bacteria that confer rifampicin resistance, one of the most essential TB drugs. This allows doctors to identify potential Multidrug-Resistant TB (MDR-TB) within hours, rather than waiting weeks for traditional culture results.

HIV weakens the immune system, making it much harder for the body to control TB bacteria. People with HIV are at very high risk of rapid progression to active TB and have different treatment needs due to drug interactions. Knowing the HIV status is essential for managing both infections effectively and preventing mortality.

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